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Spanner, R.* ; Sallam, A.H.* ; Guo, Y.* ; Jayakodi, M.* ; Himmelbach, A.* ; Fiebig, A.* ; Simmons, J.* ; Bethke, G.* ; Lee, Y.* ; Pacheco Arge, L.W.* ; Qiu, Y.* ; Badea, A.* ; Baum, M.* ; Belzile, F.* ; Ben-David, R.* ; Brueggeman, R.* ; Case, A.* ; Cattivelli, L.* ; Davis, M.F.* ; Dockter, C.* ; Dolezel, J.* ; Glick, L.* ; Greiner, S.* ; Hamilton, R.* ; Hayes, P.M.* ; Heisel, S.* ; Henson, C.* ; Kilian, B.* ; Komatsuda, T.* ; Li, C.* ; Liu, C.* ; Mahalingam, R.* ; Maruschewski, M.* ; Matny, O.* ; Maurer, A.* ; Mayer, K.F.X. ; Mayrose, I.* ; Moscou, M.* ; Muehlbauer, G.J.* ; Oono, Y.* ; Ordon, F.* ; Özkan, H.* ; Pecinka, A.* ; Perovic, D.* ; Pillen, K.* ; Pourkheirandish, M.* ; Russell, J.* ; Šafář, J.* ; Salvi, S.* ; Sanchez-Garcia, M.* ; Sato, K.* ; Schmutzer, T.* ; Scholz, U.* ; Scott, J.* ; Singh Brar, G.* ; Smith, K.P.* ; Sorrells, M.E.* ; Spannagl, M. ; Stein, N.* ; Tondelli, A.* ; Tuberosa, R.* ; Tucker, J.D.* ; Turkington, T.* ; Valkoun, J.* ; Verma, R.P.S.* ; Vinje, M.A.* ; von Korff, M.* ; Walling, J.G.* ; Waugh, R.* ; Wise, R.P.* ; Wulff, B.B.H.* ; Yang, S.* ; Zhang, G.* ; Morrell, P.L.* ; Mascher, M.* ; Steffenson, B.J.*

Whole-genome resequencing of the wild barley diversity collection: A resource for identifying and exploiting genetic variation for cultivated barley improvement.

Genes Genomes Genetics G3, DOI: 10.1093/g3journal/jkaf261:jkaf261 (2025)
Postprint Research data DOI PMC
Open Access Gold as soon as Publ. Version/Full Text is submitted to ZB.
To exploit allelic variation in Hordeum vulgare subsp. spontaneum, the Wild Barley Diversity Collection was subjected to paired-end Illumina sequencing at ∼9X depth and evaluated for several agronomic traits. We discovered 240.2 million single nucleotide polymorphisms (SNPs) after alignment to the Morex V3 assembly and 24.4 million short (1-50 bp) insertions and deletions. A genome-wide association study of lemma color identified one marker-trait association (MTA) on chromosome 1H close to HvBlp, the cloned gene controlling black lemma. Four MTAs were identified for seedling stem rust resistance, including two novel loci on chromosomes 1H and 6H and one co-locating to the complex RMRL1-RMRL2 locus on 5H. The whole-genome sequence data described herein will facilitate the identification and utilization of new alleles for barley improvement.
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Publication type Article: Journal article
Document type Scientific Article
Keywords Hordeum Vulgare Subsp. Spontaneum ; Agronomic Traits ; Genome-wide Association Study ; Whole Genome Sequence Data
Language english
Publication Year 2025
HGF-reported in Year 2025
ISSN (print) / ISBN 2160-1836
e-ISSN 2160-1836
Journal Genes Genomes Genetics G3
Quellenangaben Volume: , Issue: , Pages: , Article Number: jkaf261 Supplement: ,
Publisher Genetics Society of America
Publishing Place Pittsburgh, PA
Reviewing status Peer reviewed
Institute(s) Research Unit Plant Genome and Systems Biology (PGSB)
POF-Topic(s) 30202 - Environmental Health
Research field(s) Environmental Sciences
PSP Element(s) G-503500-002
DOI 10.1093/g3journal/jkaf261
PubMed ID 41206694
Erfassungsdatum 2025-11-11
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