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Moore, J.* ; Basurto-Lozada, D.* ; Besson, S.* ; Bogovic, J.* ; Bragantini, J.* ; Brown, E.M.* ; Burel, J.M.* ; Casas Moreno, X.* ; de Medeiros, G.* ; Diel, E.E.* ; Gault, D.* ; Ghosh, S.S.* ; Gold, I.* ; Halchenko, Y.O.* ; Hartley, M.* ; Horsfall, D.* ; Keller, M.S.* ; Kittisopikul, M.* ; Kovács, G.* ; Küpcü Yoldaş, A.* ; Kyoda, K.* ; le Tournoulx de la Villegeorges, A.* ; Li, T.* ; Liberali, P.* ; Lindner, D.* ; Linkert, M.* ; Lüthi, J.* ; Maitin-Shepard, J.* ; Manz, T.* ; Marconato, L.* ; McCormick, M.* ; Lange, M.* ; Mohamed, K.* ; Moore, W.* ; Norlin, N.* ; Ouyang, W.* ; Özdemir, B.* ; Palla, G. ; Pape, C.* ; Pelkmans, L.* ; Pietzsch, T.* ; Preibisch, S.* ; Prete, M.* ; Rzepka, N.* ; Samee, S.* ; Schaub, N.* ; Sidky, H.* ; Solak, A.C.* ; Stirling, D.R.* ; Striebel, J.* ; Tischer, C.* ; Toloudis, D.* ; Virshup, I. ; Walczysko, P.* ; Watson, A.M.* ; Weisbart, E.* ; Wong, F.* ; Yamauchi, K.A.* ; Bayraktar, O.* ; Cimini, B.A.* ; Gehlenborg, N.* ; Haniffa, M.* ; Hotaling, N.* ; Onami, S.* ; Royer, L.A.* ; Saalfeld, S.* ; Stegle, O.* ; Theis, F.J. ; Swedlow, J.R.*

OME-Zarr: A cloud-optimized bioimaging file format with international community support.

Histochem. Cell Biol. 160, 223-251 (2023)
DOI PMC
Creative Commons Lizenzvertrag
Open Access Green as soon as Postprint is submitted to ZB.
A growing community is constructing a next-generation file format (NGFF) for bioimaging to overcome problems of scalability and heterogeneity. Organized by the Open Microscopy Environment (OME), individuals and institutes across diverse modalities facing these problems have designed a format specification process (OME-NGFF) to address these needs. This paper brings together a wide range of those community members to describe the cloud-optimized format itself-OME-Zarr-along with tools and data resources available today to increase FAIR access and remove barriers in the scientific process. The current momentum offers an opportunity to unify a key component of the bioimaging domain-the file format that underlies so many personal, institutional, and global data management and analysis tasks.
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Publication type Article: Journal article
Document type Scientific Article
Corresponding Author
Keywords Bioimaging ; Cloud ; Community ; Data ; Fair ; Format; Image Data; Platform
ISSN (print) / ISBN 0948-6143
e-ISSN 1432-119X
Journal Histochemistry and Cell Biology
Quellenangaben Volume: 160, Issue: 3, Pages: 223-251 Article Number: , Supplement: ,
Publisher Springer
Publishing Place One New York Plaza, Suite 4600, New York, Ny, United States
Non-patent literature Publications
Reviewing status Peer reviewed
Institute(s) Institute of Computational Biology (ICB)
Grants Wellcome Trust