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Petersen, A.-K. ; Zeilinger, S. ; Kastenmüller, G. ; Römisch-Margl, W. ; Brugger, M. ; Peters, A. ; Meisinger, C. ; Strauch, K. ; Hengstenberg, C.* ; Pagel, P.* ; Huber, F.* ; Mohney, R.P.* ; Grallert, H. ; Illig, T.* ; Adamski, J. ; Waldenberger, M. ; Gieger, C. ; Suhre, K.

Epigenetics meets metabolomics: An epigenome-wide association study with blood serum metabolic traits.

Hum. Mol. Genet. 23, 534-545 (2014)
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Previously, we reported strong influences of genetic variants on metabolic phenotypes, some of them with clinical relevance. Here we hypothesize that DNA methylation may have an important and potentially independent effect on human metabolism. To test this hypothesis we conducted what is to the best of our knowledge the first epigenome-wide association study (EWAS) between DNA methylation and metabolic traits (metabotypes) in human blood. We assess 649 blood metabolic traits from 1,814 participants of the KORA population study for association with methylation of 457,004 CpG sites, determined on the Infinium HumanMethylation450 BeadChip platform. Using the EWAS approach, we identified two types of methylome-metabotype associations. One type is driven by an underlying genetic effect; the other type is independent of genetic variation and potentially driven by common environmental and life-style dependent factors. We report eight CpG loci at genome-wide significance that have a genetic variant as confounder (p=3.9x10-20 to 2.0x10-108, r2=0.036 to 0.221). Seven loci display CpG-site-specific associations to metabotypes, but do not exhibit any underlying genetic signals (p=9.2x10-14 to 2.7x10-27, r2=0.008 to 0.107). We further identify several groups of CpG loci that associate with a same metabotype, such as 4-vinylphenol sulfate and 4-androsten-3beta,17beta-diol disulfate. In these cases the association between CpG-methylation and metabotype are likely the result of a common external environmental factor, including smoking. Our study shows that analysis of EWAS with large numbers of metabolic traits in large population cohorts are, in principle, feasible. Taken together, our data suggests that DNA methylation plays an important role in regulating human metabolism.
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Publikationstyp Artikel: Journalartikel
Dokumenttyp Wissenschaftlicher Artikel
Schlagwörter Dna Methylation Patterns; Quantile Normalization; Mass-spectrometry; Genetic-variation; Subset-quantile; Breast-cancer; Phenotypes; Estrogen; Pipeline; Disease
Sprache englisch
Veröffentlichungsjahr 2014
Prepublished im Jahr 2013
HGF-Berichtsjahr 2013
ISSN (print) / ISBN 0964-6906
e-ISSN 1460-2083
Quellenangaben Band: 23, Heft: 2, Seiten: 534-545 Artikelnummer: , Supplement: ,
Verlag Oxford University Press
Verlagsort Oxford
Begutachtungsstatus Peer reviewed
Institut(e) Institute of Bioinformatics and Systems Biology (IBIS)
Institute of Genetic Epidemiology (IGE)
Research Unit Molecular Epidemiology (AME)
Institute of Epidemiology (EPI)
Molekulare Endokrinologie und Metabolismus (MEM)
German Center for Diabetes Reseach (DZD)
POF Topic(s) 30505 - New Technologies for Biomedical Discoveries
30501 - Systemic Analysis of Genetic and Environmental Factors that Impact Health
30202 - Environmental Health
30201 - Metabolic Health
Forschungsfeld(er) Enabling and Novel Technologies
Genetics and Epidemiology
PSP-Element(e) G-503700-001
G-504100-001
G-504200-001
G-504000-006
G-504000-001
G-505600-001
G-504200-002
G-504090-001
PubMed ID 24014485
Scopus ID 84897372328
Erfassungsdatum 2013-09-10