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Richter, M. ; Deligiannis, I.K. ; Yin, K. ; Danese, A. ; Lleshi, E.* ; Coupland, P.* ; Vallejos, C.A.* ; Matchett, K.P.* ; Henderson, N.C.* ; Colomé-Tatché, M. ; Martinez Jimenez, C.P.

Single-nucleus RNA-seq2 reveals functional crosstalk between liver zonation and ploidy.

Nat. Commun. 12:4264 (2021)
Verlagsversion Forschungsdaten DOI PMC
Open Access Gold
Creative Commons Lizenzvertrag
Single-cell RNA-seq reveals the role of pathogenic cell populations in development and progression of chronic diseases. In order to expand our knowledge on cellular heterogeneity, we have developed a single-nucleus RNA-seq2 method tailored for the comprehensive analysis of the nuclear transcriptome from frozen tissues, allowing the dissection of all cell types present in the liver, regardless of cell size or cellular fragility. We use this approach to characterize the transcriptional profile of individual hepatocytes with different levels of ploidy, and have discovered that ploidy states are associated with different metabolic potential, and gene expression in tetraploid mononucleated hepatocytes is conditioned by their position within the hepatic lobule. Our work reveals a remarkable crosstalk between gene dosage and spatial distribution of hepatocytes.
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Publikationstyp Artikel: Journalartikel
Dokumenttyp Wissenschaftlicher Artikel
Schlagwörter Gene-expression; Rna-seq; Transcription Factor; Human Hepatocytes; Ppar-alpha; Cell-cycle; Fibrosis; Polyploidization; Heterogeneity; Homeostasis
Sprache englisch
Veröffentlichungsjahr 2021
HGF-Berichtsjahr 2021
ISSN (print) / ISBN 2041-1723
e-ISSN 2041-1723
Zeitschrift Nature Communications
Quellenangaben Band: 12, Heft: 1, Seiten: , Artikelnummer: 4264 Supplement: ,
Verlag Nature Publishing Group
Verlagsort London
Begutachtungsstatus Peer reviewed
Institut(e) Helmholtz Pioneer Campus (HPC)
Institute of Computational Biology (ICB)
POF Topic(s) 30204 - Cell Programming and Repair
30205 - Bioengineering and Digital Health
Forschungsfeld(er) Pioneer Campus
Enabling and Novel Technologies
PSP-Element(e) G-510005-001
G-554200-001
G-503800-001
Förderungen Incubator grant sparse2big
Helmholtz Pioneer Campus
DOI 10.1038/s41467-021-24543-5
WOS ID WOS:000675333100005
Scopus ID 85110545074
PubMed ID 34253736
Erfassungsdatum 2021-07-22
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